منابع مشابه
PrepMS: TOF MS data graphical preprocessing tool
UNLABELLED We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely availab...
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Recent developments in mass spectrometry have introduced clinical proteomics to the forefront of diseases diagnosis, offering reliable, robust and efficient analytical method for biomarker discovery and monitoring. MALDI-TOF is a powerful tool for surveying proteins and peptides comprising the realm for clinical analysis. MALDI-TOF has the potential to revolutionize cancer diagnostics by facili...
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MOTIVATION Mass spectrometry is a high throughput, fast, and accurate method of protein analysis. Using the peaks detected in spectra, we can compare a normal group with a disease group. However, the spectrum is complicated by scale shifting and is also full of noise. Such shifting makes the spectra non-stationary and need to align before comparison. Consequently, the preprocessing of the mass ...
متن کاملComparison of MALDI-TOF mass spectrometry data preprocessing techniques and their effect in sample classification
Matrix assisted laser desorption ionization time-of-flight (MALDITOF) is one of the highthroughput mass spectrometry (MS) technologies, producing data requiring an extensive preprocessing before subsequent analyses. In the last years, various preprocessing techniques have been developed for different tasks, including baseline correction, smoothing, normalization, peak detection and peak alignme...
متن کاملLC/MS Preprocessing and Analysis with xcms
The xcms package reads full-scan LC/MS data from AIA/ANDI format NetCDF, mzXML, and mzData files. All data to be analyzed by xcms must first be converted to one of those file formats. Software packages for many instruments are be able to export to NetCDF. For information about how to export to NetCDF, please consult the documentation that came with your instrument’s software. The online help of...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2006
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btl583